Okay lets see if I get everyone's questions in here.
I can't use the L36 HB because it doesn't have the second set of ribs for the supercharger

. The fly wheel was changed over from the L67. I was pretty careful to get it back to the same position, but I would almost bet it may be off a little bit. I have a single timing chain and am still using the balance shaft, but the vibration is almost identical to if I was using a double roller without the balance shaft. It really isn't that big of deal, but it has some decent vibration under load and accelerating, but nothing major. Like I said, just like if I was using the balance shaft. And yes, everything is put back in to spec and torqued correctly.
My car is a crappy 2 door 94 toyota tercel.

Girls car, but hey, it gets 40 MPG and has 182K on it and still goes like it did when I bought it 5 years ago.