Remember when I just said this will be a fun way to get to work? I lied.. lol
I was riding the bike occasionally right up until a few weeks ago.
Right before I started tearing into it I installed a power commander 3 that I can tune the fueling on, a PLX WB02 sensor with handlebar mounted gauge, and a velocity stack/filter kit.
The intakes leaned the bike out quite a bit but a canned PC3 tune that was available got me pretty close.
Currently the bike is apart for the following:
Powder Coat
-Clutch cover (sanded out minor scratches from PO), stock silver
-Generator cover, stock silver
-Horizontal cyl exhaust timing cap, stock silver
-Brake and Clutch master caps, black. I bought black anodized caps but I guess they weren't hard anodized since they faded.
Desmo Valve Check and Shimming
-The opener and closer shims are barely within spec but not ideal. I'm going to get them to the recommended specs, save $400 and know exactly where I'm at. The belts have to come off for this which kind of sucks but it's not the end of the world.
Fuel injectors
-Sent out for cleaning and flow testing
Wheels
-Having minor flat spot from PO in the front wheel fixed then powder coated black.
-Rear wheel is being powder coated black. It has a few chips and paint imperfections.
Tires
-MICHELIN Pilot Road 4s
Pedals
-Switching to moto-gp reverse shifter hard anodized gold and matching brake pedal
Tank
-100% NIB Ducati Dark tank, got a good ebay deal. My stock tank had a couple chips and some scratches from the PO
-Swapped everything over and changed the fuel filter
Exhaust
-Go back over the exhaust with Stain Magic
Other
-Clean up the oil leaks from the worn timing cap gaskets I'll be replacing
Time to really start cranking.. Spring is here. We still have snow piles but it got up to 55* today.

95 SLE... a keeper. 241k miles. Low and Slow.
97 BMW 528i
98 Infiniti vq35'd i30: 13.3@104mph, 30MPG Hwy (RIP)
02 Jag X-type
03 BMW M5
05 Chevy Cobalt LS
07 Infiniti G35s 6MT (Sold)
07 Ducati Monster S2R 800 with DS1000 swap
83 Yamaha IT175K
72 Yamaha DS7: '74 RD250 swap, JL chambers
Info on dropping a 92-99:
Here.